Table 2 Results for stage 1, stage 2 and the combined samples from stage 1 and stage 2
From: ANKS1B is a smoking-related molecular alteration in clear cell renal cell carcinoma
Smokers vs non-smokers | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Affymetrix probeset | Gene | Chrom | Stage 1: non-obese patients | Stage 2: obese patients | Combined (stage 1 + stage 2) | ||||||
Fold change in tumor tissue (p-value) | Fold change in normal tissue (p-value) | Interaction p-value | Fold change in tumor tissue (p-value) | Fold change in normal tissue (p-value) | Interaction p-value | Fold change in tumor tissue (p-value) | Fold change in normal tissue (p-value) | Interaction p-value | |||
240292_x_at | ANKS1B | 12 | 0.92 (0.013) | 1.08 (0.02) | 0.00082 | 0.98 (0.64) | 1.11 (0.005) | 0.018 | 0.94 (0.014) | 1.09 (0.0013) | 0.00005 |
241949_at | ACOT6 | 14 | 0.88 (0.0098) | 1.07 (0.15) | 0.00085 | 0.89 (0.1) | 1.04 (0.56) | 0.034 | 0.88 (0.0019) | 1.06 (0.13) | 0.00006 |
236999_at | PPWD1 | 5 | 1.13 (0.0062) | 0.99 (0.74) | 0.0015 | 1.2 (0.0034) | 1.04 (0.5) | 0.038 | 1.14 (0.00023) | 1.0 (0.99) | 0.00016 |
233996_x_at | EYS | 6 | 0.94 (0.022) | 1.03 (0.27) | 0.0022 | 1.0 (1) | 1.06 (0.045) | 0.046 | 0.96 (0.033) | 1.04 (0.077) | 0.00026 |
241459_at | LIMCH1 | 4 | 1.27 (0.06) | 0.89 (0.37) | 0.0077 | 1.9 (0.0032) | 1.09 (0.65) | 0.02 | 1.43 (0.0011) | 0.95 (0.62) | 0.00047 |
207568_at | CHRNA6 | 8 | 0.92 (0.24) | 1.15 (0.064) | 0.0075 | 0.95 (0.62) | 1.23 (0.034) | 0.037 | 0.93 (0.2) | 1.17 (0.0069) | 0.00058 |
210472_at | MT1G | 16 | 1.0 (0.97) | 1.47 (0.00013) | 0.0045 | 0.93 (0.62) | 1.4 (0.032) | 0.018 | 0.98 (0.82) | 1.45 (0.0000099) | 0.00061 |
242463_x_at | ZNF600 | 19 | 1.48 (0.0064) | 0.98 (0.87) | 0.0077 | 1.78 (0.001) | 1.31 (0.083) | 0.045 | 1.56 (0.00013) | 1.07 (0.53) | 0.0012 |
210322_x_at | UTY | Y | 0.98 (0.76) | 1.13 (0.079) | 0.0086 | 0.96 (0.72) | 1.22 (0.075) | 0.0093 | 0.98 (0.68) | 1.16 (0.012) | 0.00029 |
1557478_at | NA | NA | 1.22 (0.03) | 0.95 (0.55) | 0.00052 | 1.88 (0.00002) | 1.31 (0.022) | 0.0011 | 1.38 (0.00012) | 1.04 (0.62) | 0.000002 |
1558410_s_at | NA | NA | 1.42 (0.013) | 0.93 (0.58) | 0.0049 | 2.49 (0.0000087) | 1.63 (0.0038) | 0.017 | 1.66 (0.000044) | 1.1 (0.44) | 0.0006 |
210717_at | NA | NA | 1.74 (0.00062) | 0.89 (0.47) | 0.0033 | 2.12 (0.00026) | 1.41 (0.053) | 0.027 | 1.83 (0.000011) | 1.03 (0.8) | 0.00086 |
232324_x_at | NA | NA | 1.17 (0.004) | 0.97 (0.52) | 0.0081 | 1.27 (0.0018) | 1.03 (0.61) | 0.039 | 1.2 (0.000058) | 0.99 (0.77) | 0.0011 |
232369_at | NA | NA | 1.36 (0.021) | 0.89 (0.4) | 0.0081 | 2.07 (0.00065) | 1.3 (0.15) | 0.031 | 1.53 (0.00016) | 1.0 (0.99) | 0.00078 |
244290_at | NA | NA | 1.32 (0.0038) | 0.99 (0.94) | 0.0015 | 1.66 (0.000041) | 1.26 (0.022) | 0.033 | 1.4 (0.000035) | 1.06 (0.42) | 0.00019 |