SNP | Chr | Position | Gene(s) | Role | Alleles | Frequency (MAF) | p - HWE | OR (95% CI) | p value | |
---|---|---|---|---|---|---|---|---|---|---|
Cases | Controls | |||||||||
rs878567 | 5 | 63,960,164 | HTR1A | ncRNA_intronic | G/A | 0.181 | 0.184 | 0.034 | 0.98(0.65–1.50) | 0.941 |
rs6294 | 5 | 63,961,426 | HTR1A | exonic | T/C | 0.181 | 0.184 | 0.034 | 0.98(0.65–1.50) | 0.941 |
rs6295 | 5 | 63,962,738 | HTR1A | ncRNA_intronic | G/C | 0.203 | 0.193 | 0.011 | 1.07(0.71–1.61) | 0.743 |
rs11178996 | 12 | 71,937,074 | TPH2 | intergenic | G/A | 0.341 | 0.431 | 0.041 | 0.68(0.49–0.96) | 0.027 * |
rs11178997 | 12 | 71,938,373 | TPH2 | upstream | A/T | 0.231 | 0.215 | 0.212 | 1.09(0.74–1.61) | 0.655 |
rs11179001 | 12 | 71,944,865 | TPH2 | intronic | A/G | 0.456 | 0.436 | <0.001 | 1.08(0.78–1.50) | 0.634 |
rs10879346 | 12 | 71,958,055 | TPH2 | intronic | T/C | 0.407 | 0.429 | 0.335 | 0.91(0.65–1.27) | 0.579 |
rs1386492 | 12 | 71,968,485 | TPH2 | intronic | T/C | 0.434 | 0.367 | 0.572 | 1.32(0.95–1.84) | 0.098 |
rs11179023 | 12 | 71,978,617 | TPH2 | intronic | A/G | 0.17 | 0.200 | 0.324 | 0.82(0.53–1.26) | 0.361 |
rs7305115 | 12 | 71,979,082 | TPH2 | exonic | A/G | 0.44 | 0.384 | 0.657 | 1.26(0.91–1.75) | 0.170 |
rs11179041 | 12 | 72,010,169 | TPH2 | intronic | A/G | 0.198 | 0.802 | 0.216 | 0.89(0.60–1.34) | 0.590 |
rs10879352 | 12 | 72,013,178 | TPH2 | intronic | C/T | 0.198 | 0.802 | 0.218 | 0.88(0.59–1.32) | 0.548 |
rs120074175 | 12 | 72,031,544 | TPH2 | exonic | A/G | 0.192 | 0.808 | 0.210 | 0.90(0.59–1.35) | 0.599 |